Scellnetor

Single Cell Network Profiler for Extraction of Systems Biology Patterns from scRNAseq Trajectories

Scellnetor is a novel clustering tool for scRNA-seq data that takes Scanpy generated AnnData objects in H5AD file-format as input. With Scellnetor you can compare two sets of cells that you manually select on one of your Scanpy-generated plots. The output will be connected components of genes where the genes are either differently or similarly expressed in the two sets. You can also do a clustering of a single set, where the genes in the connected components are similarly expressed. For every cluster, you get a plot showing mean gene expression and the genes’ 95 % confidence intervals and a table with statistically significant GO-terms.

For full documentation and the webservice, visit the Scellnetor page here.

Project Members

Alexander GB Grønning

(Former group member)